PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008364-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 308aa    MW: 33920.4 Da    PI: 7.2361
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008364-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.1e-33170227259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  NNU_008364-RA 170 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 227
                    8******************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-34154228IPR003657WRKY domain
SuperFamilySSF1182902.88E-28161227IPR003657WRKY domain
PROSITE profilePS5081129.712164229IPR003657WRKY domain
SMARTSM007743.2E-38169228IPR003657WRKY domain
PfamPF031061.1E-25170227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGDDETKPRL GTDFACSSGW TLGSEADSDY FFGNDRESSI LSEFGWNLRS DTDRNREKDS  60
FSPFHQIGLD DGSDLAGTSA FLLPQTPPPP PLAPSNLNPT VSAGLVDKPG DASPSNPSVS  120
SSSSDEPQEK STTSDAKQPE IPSKNRKKGQ KRTRQPRFAF MTKSEIDHLE DGYRWRKYGQ  180
KAVKNSPFPR SYYRCTNSKC TVKKRVERSS EDPTIVITTY EGQHCHHTVG FPRSSAMAHE  240
AALASRLNDS APQLYYPRVQ LPLGGGIDVT QPHRGTQPQM PREPTPHPQP STDEGLLGDI  300
VPAGMRSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25159226774Probable WRKY transcription factor 4
2lex_A1e-25159226774Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258120.10.0PREDICTED: probable WRKY transcription factor 57
TrEMBLF6HF791e-100F6HF79_VITVI; Putative uncharacterized protein
STRINGVIT_01s0011g00720.t011e-100(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.28e-68WRKY DNA-binding protein 57